First rule of troubleshooting: - If you take something apart and it develops a problem directly after, check everything you touched again. Could be many things, chief among them, not putting back vac lines. I assume you messed with the balance tube? If you lifted the balance tube you might have lost one of the o-rings and now it lost it's seal.
Did you check the coilpack connectors? When my wife was reassembling mine during the injector swapout she didn't realize the connectors had rubber rings in them and almost "double-stacked" a connector which would cause it to have bad contact. etc, etc. Check what you touched. Still not right? codes.
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